rs31418208 SNP Detail

Summary

• ID
  rs31418208
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:168303007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGGAAG AGTAGCGAGC
  AAAAGCTGTT GATGCTATAT TTTCATCTGG TGTGCCTCAT CCTACACTTC TGGATCCAAA
  CACCATAGAT ATGCCTGTCT TGACACCATT GTCTGTGATA ACTGTTAAGG GTGGCAATAG
  AGGATTAACA CAGCATCTCC AACCAGCACT CGCCATCACA TGTCCAGGTT CTTTGCACTT
  M
  GGCCTCGCCC AGGAATCAGG ATGGACGCAG AATGCAAAGG AAACCTTCCT TCCTTGCTTG
  GGAAAGAGCC AACCCGCCCG CCCGCCCGCC CGCCCGTGGG TCCTTTGCCT TGCCAGCTGC
  TCCAGAGCTC TTCCGGTTCC CATGCGGCTT AATGGAGAAT GCAAGACGCA GAACCCAATT
  TTTTAATTTG TATTATTTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49736496	NES13039565	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31418208					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49736496	NES13039565	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:168303007 () rs orientation: forward

Symbol	Name	Function Class
Gm39696	predicted gene, 39696	196 bp downstream
Rr422866	regulatory region 422866	1147 bp distal
Rr422867	regulatory region 422867	578 bp proximal
Rr422868	regulatory region 422868	863 bp proximal