rs31418205 SNP Detail

Summary

• ID
  rs31418205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:168303679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAATACA TAAAATTAGA
  AACCAAATTT ACGGACCTGT CAGTCTGCAT CAAATCCAGT GTCTTTCCCT GACCTGTCAC
  CGAAAGTGGC ATCCAATCTA GCAAATGGCT TGATGCCGTG TGGGGGGCTC CGCAGCACTG
  TCTGTAATAA CGCAGCAGTA AACATGCTTG CAGCGGGCCT CCCCTCAAGG ACTTTACAGG
  Y
  ACTTCCTCAA TCTGCAAAGA CCAAACCAAG GTCCAGCAAA GGGTTCCCAT CCACCCACAG
  AGAACAGCTG ACTGGAGCGA CTTCCGTGCA ATGCCTACAT GTATGTGTCT GACCGGCGAG
  GGTCTGAAAT TCATAGGTCC TTTCTGTGTA CCCCGGATTG GCCCCTCTGA ATGCTGGAGT
  CTCCTGTAGC ACTGGGCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49736493	NES13039568	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31418205					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49736493	NES13039568	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:168303679 () rs orientation: forward

Symbol	Name	Function Class
Gm39696	predicted gene, 39696	within coordinates
Rr422866	regulatory region 422866	1819 bp distal
Rr422867	regulatory region 422867	within coordinates
Rr422868	regulatory region 422868	191 bp proximal