rs31415315 SNP Detail

Summary

• ID
  rs31415315
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137047389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCGGAGAAC GTCTCAGGAA ATGTGTTAAC TTTTTAGGGA
  CTAAAAATAG AATTTTGACT TAAAATGTGC TAGTTTAAAA CAACGACAAA CAAACAAAAT
  W
  ATGGTCTTTT CCGTCATCGG CCCAGAATAA TAGTGGATGG GGTAAGAGTG AAAGTCCATC
  ACTGGAAACA GTGCTACCAA AGTCTCCAAC AGTACAGCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45531422	mCV23606868	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss135939709	ENSMUSSNP3947631	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss320975395	CHEV_3_137004592	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31415315					SNP	T	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137047389 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	Intron
Rr585936	regulatory region 585936	475 bp distal
Tssr31897	transcription start site region 31897	582 bp downstream
Tssr31898	transcription start site region 31898	533 bp downstream
Tssr31899	transcription start site region 31899	482 bp downstream
Tssr31900	transcription start site region 31900	474 bp downstream
Tssr31901	transcription start site region 31901	438 bp downstream
Tssr31902	transcription start site region 31902	405 bp downstream