rs31414571 SNP Detail

Summary

• ID
  rs31414571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30072253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCTGCCC AGCCAAACAC
  CAAGCTATAG GCACAAAGGG ACTGCACCCC CAGAGCATCC TGTCAGCATG GCTCTCCAGA
  GAGATCCTGG GTCATTTCTG AGGGACTCTC TGCCTTTCTT CCTTTGTATT TATTTATTTT
  TCCTTTTCTT AAGTTGACCA ATACGGTGCT GCAGAAAGGA AGAAAGAAAA GAAAGGGAAA
  R
  AAGAGAAAAG AAAAGGAGAG AGAAAAAAAG AAAAGACAGA CAGACAGAAA GGAAATTAAA
  GGTTTAAAAA AAAAAAAGGT AAATAAAAAA TTTCCCCTGG TCTGGAAACA GGCTCCACTG
  AAGCCATGTT AATCTCCGCC TCAGTAATTT GGTTCTCCAG GAGAAGACAG AAGCCCTGCT
  GCTGTGCCCT GCACTTCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45531237	mCV22689468	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss134728267	ENSMUSSNP4192954	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31414571					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30072253 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Mecomos	MDS1 and EVI1 complex locus, opposite strand			1836 bp upstream
Rr574706	regulatory region 574706			1002 bp distal
Rr574707	regulatory region 574707			67 bp proximal
Rr574708	regulatory region 574708			1299 bp proximal
Rr574709	regulatory region 574709			1946 bp proximal