rs31409898 SNP Detail

Summary

• ID
  rs31409898
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:111536496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTATGT TACTGTTTTT
  TAATCTGTTT TCTAGAAATT AGATTGTCTT TGAATCATTT TGTTTGTTTT TTAAAATCAG
  GAAATAAGAT TCCATGGATG GGAAAAAAAT GTTGCAGAAA TTTTACTATC TAGCATCTCC
  AATTGTAAAA TCAATGCAAA CAAATCTCAA AAAAGAAAAG ATAAATGGAA AACAGGTTGT
  K
  AGGGCTGGAG GGGCGACTCA TTGGTTAAGG GTATGCCCAG CTCTTACAGA GGATCTGAGT
  TCAGTTCTCA GCATCACAAA GGCAGAACAC CACTGCTTGA ATCTGTAGCT CTTGGGAGAT
  CTGGCGCCCC CTTCTGGCCT CCATGGGCAC TTCACAAACG TGCACATAGC CATCACTCAT
  ATGCATAATT AGTAAGAATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48049258	NES11878902	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T		G	T	T	G		T
ss321905996	CHEV_6_111509529	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31409898					SNP	T	T	T	T	T	T	G	T	T	T	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48049258	NES11878902	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:111536496 () rs orientation: forward

Symbol	Name	Function Class
Grm7	glutamate receptor, metabotropic 7	Intron
Rr379936	regulatory region 379936	within coordinates
Rr636272	regulatory region 636272	121 bp proximal