rs31408312 SNP Detail

Summary

• ID
  rs31408312
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:111535015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTGGTC AAGGAGAAAA
  CTCTTCCCCA TGTATTTTTC TCTAACATCC GCAAATATGC TGAGGCATCT ACTTACACCT
  GCACAGACAT ACAAACTTAT ACAGATACAT ATGCACATAT GCACGCACAC ACATACACAC
  CAGGGCAATA CACAAAATAC AATATTTAAA AAAGAGAAGT CCAGCTAACT AACCTAAAAC
  M
  GTATTTTACA GTTCTTCAGA GAGATTGTGG CAAAGAGCTA CAGAGGAAGC TGGAGAGACA
  AATAGTGTCT CAAATTTTTT GTTCACAATT GAATTACCAT AACTATGAAA AGGTTTATCT
  TTCACTCATT ATGTCCTACG TTCTTGTTCA GATTTGCATC TTTTGCTATG AATATTGTGC
  TAATTTAATC AATTAGGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48049242	NES11878892	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C		A	C	C	A		C
ss321905978	CHEV_6_111508048	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31408312					SNP	C	C	C	C	C	C	A	C	C	C	C	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48049242	NES11878892	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:111535015 () rs orientation: forward

Symbol	Name	Function Class
Grm7	glutamate receptor, metabotropic 7	Intron
Rr379936	regulatory region 379936	1342 bp upstream
Rr636272	regulatory region 636272	1602 bp proximal