rs31408306 SNP Detail

Summary

• ID
  rs31408306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:111534661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGCTTC CTGGTGACAA
  AGGTCAACAC TTACCTGAAT ACACAACAAA TAAAACGTAA ACCCATAGCT TGTGGGTCCC
  TAGACTGTTT TGTATAGTCA GCATCTATGA AGACTGGCAT TCAATACTTG TCAAATCCCA
  TTTTCTTAGA TAATTGGATA TGGTAGACAG ACACCAAGAT TTTGGAGTTT TTGCAACTGG
  R
  TTAGAATTAA TGGTGATTTT GACTAGAGTG TTCTTTTCCT GATCGATTTT ATTCTCACCC
  TCCCTAGCTC CTTGTCTCAA GAAGTCAGTT AGGGCCAACA AGGTGACTCA GTAAGTAAAA
  GCCCTTGCTA CCAAGATTGA AGACCTGAAT TTGAGCCTTG GTCAAGGAGA AAACTCTTCC
  CCATGTATTT TTCTCTAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48049236	NES11878935	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	A	A	A		A
ss321905972	CHEV_6_111507694	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31408306					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48049236	NES11878935	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:111534661 () rs orientation: forward

Symbol	Name	Function Class
Grm7	glutamate receptor, metabotropic 7	Intron
Rr379936	regulatory region 379936	1696 bp upstream
Rr636272	regulatory region 636272	1956 bp proximal