rs31407690 SNP Detail

Summary

• ID
  rs31407690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130729216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCTCATAC CAGAAATTCC TCCACTGTCT TTCCAGTGTG
  CCTCACATGA CTCTTCTTCC AGCACAAACA ACCTGGGGCT CCACTGCAGA CTGCCAGCTT
  Y
  CCACCCAGGC CTGATTGCTT GCGATTTGTA ACTCAGCTTA GTGCAGCTCT GCTTCTGTCA
  GCTTCTGCTT GGAAAATGAG CAGTTTGCTC CTGGTCACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45530781	mCV23363573	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss135902526	ENSMUSSNP4736199	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31407690					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130729216 () rs orientation: forward

Symbol	Name	Function Class
2010110G14Rik	RIKEN cDNA 2010110G14 gene	within coordinates
Gm64594	predicted gene, 64594	within coordinates
Gm64601	predicted gene, 64601	within coordinates
Rr367556	regulatory region 367556	1463 bp upstream
Rr585239	regulatory region 585239	within coordinates
Rr585240	regulatory region 585240	810 bp proximal
Rr585241	regulatory region 585241	1482 bp proximal
Tssr31681	transcription start site region 31681	1018 bp upstream