rs31404690 SNP Detail

Summary

• ID
  rs31404690
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57752369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGT TGGACTGAGG CACCTTTTCA
  W
  TTTTAGGTTT ACCAAAGCTG TCATA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45531039	mCV22719544	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A
ss135204801	ENSMUSSNP2778646	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
ss320781800	CHEV_3_57648870	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31404690					SNP	T	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57752369 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pfn2	profilin 2			Intron
				mRNA-UTR
Rr577164	regulatory region 577164			803 bp distal
Rr577165	regulatory region 577165			961 bp distal
Rr577166	regulatory region 577166			816 bp distal
Rr577167	regulatory region 577167			673 bp proximal
Rr577168	regulatory region 577168			920 bp proximal