rs31403845 SNP Detail

Summary

• ID
  rs31403845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90567669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAAGGAT ATGTATGTCT
  AAGTAGTCCT AGTCAAGGTG TGGTCCTGCA CATCACTGAT CCTGTAAGGC AGTCGGACAA
  GTTGTTAGAA TGGTGGGAAA TCTTTTTTTC TAGAGACAGG TCCCCCTTTG GCTGGTGCCT
  TTCACTTCTC CCACCATGAC ATCGTTGGGG AACTTTCCAT TTCGTTGGAG TCCATTGTTT
  Y
  AATAGTCTGA TAGTCAAATT GAGAGCCACA AAATGTTTCG TTAGAATGTC TTCATTTCTG
  CTGAGTCAGT TATGTTCTCA GCACACACTT GTGGCTGCTG CTGTCAGACA ACCCTGCTGC
  CCACTTAGAG GGACTGCTAT CTGGTGGTTA TTGTTCATGG ACCCACGCCT TACTCATTCT
  ACCAAGGATG CTGGCAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45531100	mCV24984137	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss135478353	ENSMUSSNP2268565	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31403845					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90567669 () rs orientation: forward

Symbol	Name	Function Class
Gm57853	predicted gene, 57853	1693 bp downstream
Tssr946	transcription start site region 946	372 bp downstream
Tssr30264	transcription start site region 30264	702 bp downstream
Tssr34247	transcription start site region 34247	926 bp upstream
Tssr34248	transcription start site region 34248	914 bp upstream