rs31393904 SNP Detail

Summary

• ID
  rs31393904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126401075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGCAGGAAGC CCTAGGATAA AGCAGACCTG ATAGTTCAGG CCTGTAATCC CAGAATTTGA
  GAGGTAGGGC AGAAAGATCC GAAGTTCAAG GCCATCCTTG TCTGTATGAG TTAAGAGGTC
  AGCTTGGGGT ACGTGAGTGA GACCTTGTCA AAAAAAAAAA AAAAAGAAAG AAAGAAAGAA
  GGAAAGGAAA GGAAAGGAAA GGAAAGGAAA GGAAAGGAAA GGAAAGGAAA GGAAGAAAGA
  AAAGAAAGTG ATAGAGTGAG TATTTCAAAC CAGTTTCTCT TACTCTGAAG TCTGAATCCA
  Y
  TTTTTCCATG GGCTGCTGAA CTCTGCTGTA TTTGTTTGTA TGAGCGTGGC TCCATACCCC
  TTTTTACATT TCCATGGCCT CCAGGGTCTT GAGTGGTACA TTTCAGAAAA TACATTTAGA
  ATTCCAACTT GTGAGGAAAG AACATTTTAA TTGCCATGGT AACATAAGAT CAAGTTGAAG
  TTTCAGGCGG CTCTTTGCGA CTTTCTAGAA GGAAAAATCC TAGAGTGGGA AATGTTATCA
  AAATGTTAGG AAAGTGACCG TGCAAGAGTG TGTGAGACTC GGCAGTGAGC TCTTAGGATT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45530307	mCV23467172	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135836998	ENSMUSSNP6370169	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31393904					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126401075 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Rr584652	regulatory region 584652			1761 bp proximal
Rr584653	regulatory region 584653			1972 bp proximal
Tssr31576	transcription start site region 31576			305 bp downstream