rs31393059 SNP Detail

Summary

• ID
  rs31393059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127623143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGTCTG AATTTGGAGG
  GCTATAAAGT GTCAAATTGA ACTGGATTCC AAAGAGAGTA CAAAAGTAAC TGAAATATCT
  CCTCGAGTAA CTAAGCTCTG CAGCATATCT GCATGACTAG ATATGACGAA CGTTCTGATC
  GCCTTTGATT TGTCCTCTAT GTTTAATTCA TCAGTTCCAC AGCCGAAAAC GCTGCCACAC
  R
  TCCAGTACTA AGTGTGCGGC TTTGAGGCTA AACATGCTCA CTGTATATGT AACGCCATTC
  CCATAAGTGC TTCTGTACAT AAGACATGAC TACATCTTTC ATACCATTTT CACCAGACAC
  TGGTAGTGGC TAGAACTACT GTTGTAACGT AAGAGGGTCA GACTGTACAA AAGTTCCTGA
  ATCTATTTAA GAAAAAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45530504	mCV23993993	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
ss135872297	ENSMUSSNP3926738	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss320957253	CHEV_3_127532412	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31393059					SNP	G	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127623143 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	61 bp downstream
Rr584870	regulatory region 584870	1978 bp distal
Rr584871	regulatory region 584871	725 bp proximal
Rr584872	regulatory region 584872	1315 bp proximal