rs31392971 SNP Detail

Summary

• ID
  rs31392971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165918645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTTCAGG AGATACAGCC
  CAGAGTATAA GCTATCCTTC TAGAGTTTAC ATCCGAGTGG GGTCAGACAG ACAAATTGAC
  AAGCTGATAA TAAGCGAATA ATATCCTGAG TGTTCTAAAG TGCCATTTGT TTATTACATC
  TCTTCATGAG AGTGTTATCT CCTAAAGGGT GAAAATCACT CGGTCTCGAT TTCTACTGAA
  Y
  ACTCAATGTC TATCATGCCA TGTTTAACAT GGCATATATT TTTTTTAAAA CTAAGGCAAA
  ATACCCAAAG AGTAGGATTT TGAAGAGTAA AGGAGATAAT TGTAGCGATA ATGTAGATAA
  GCTATGTTAA ATCTCTCAGT GTAGTGCCTG GAATGCGCTA AACACTTAAT ATACATATTG
  GCTGTCTTTC AATTAGATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49733337	NES13042089	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31392971					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49733337	NES13042089	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165918645 () rs orientation: forward

Symbol	Name	Function Class
Gm37923	predicted gene, 37923	1339 bp upstream
Rr422528	regulatory region 422528	1078 bp distal