rs31390087 SNP Detail

Summary

• ID
  rs31390087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28752654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT GTGTTGTATT CATGGCTGTG
  R
  CAGCATTGCA ATCAGACAGG GATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45530601	mCV22688123	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss134715500	ENSMUSSNP2415022	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31390087					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28752654 () rs orientation: forward

Symbol	Name	Function Class
Rr574616	regulatory region 574616	1813 bp distal
Rr574617	regulatory region 574617	592 bp distal
Rr574618	regulatory region 574618	314 bp distal
Rr574619	regulatory region 574619	within coordinates
Rr574620	regulatory region 574620	988 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	Intron
Tssr28653	transcription start site region 28653	593 bp downstream
Tssr28654	transcription start site region 28654	525 bp downstream