rs31388672 SNP Detail

Summary

• ID
  rs31388672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150524568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTAGTTAA TTTAAATAGG
  GAAATCATCT AATAGTGACC TCTAGGATGT TTAAAGTTCA AAGTCTAGGG TTCTGGTAAA
  ACACGGCACA AATGAGTGTC TCTGTGCTGT TAAATATAAT GAAGCAGGAA TAATAATGAT
  ATAATTAGAT TAGCGAATAC ACCTAACTAA AGACAGCTTT TGCTGTGTTG CTGACATCCT
  Y
  ACATGTTGGC TCTTTCTCTT TTACTTTTAT GCAGGTAACA CAGAGTTAGA ACTAGGAGAA
  AACTGTGTCT ATGCAAGGAT TTGATTGAAA AGCATGTAGG CGATTGTCCA GCGTTTAGGA
  GTTCATTATC CAGCAATTAA TGAGGCTTTT AGTCAGGAAG TAAAATGGCT TGTTCACAAT
  ACAGGGCTTT TTACCTATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45530594	mCV23512731	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T		T
ss61099718	NES16604073	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		T	T	T	C		T	C		T
ss136087307	ENSMUSSNP3156317	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss321023302	CHEV_3_150481895	CHEVERUD	SCREENING_POP	f	SNP													C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31388672					SNP	C	C	C	T	C	C	C	T	T	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61099718	NES16604073	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150524568 () rs orientation: forward

Symbol	Name	Function Class
Rr587375	regulatory region 587375	445 bp proximal