rs31388275 SNP Detail

Summary

• ID
  rs31388275
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87080134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACT GACACAGCTG CCCCTCGACC
  S
  GCCATGCTCT TCCCCTCCCC CTCTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45528374	mCV24904437	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss135455067	ENSMUSSNP2437116	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320831250	CHEV_3_86976749	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31388275					SNP	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87080134 () rs orientation: forward

Symbol	Name	Function Class
Gm64310	predicted gene, 64310	within coordinates
Kirrel1	kirre like nephrin family adhesion molecule 1	Intron
Rr579454	regulatory region 579454	161 bp distal
Rr579455	regulatory region 579455	840 bp proximal
Rr579456	regulatory region 579456	1341 bp proximal
Rr579457	regulatory region 579457	1713 bp proximal
Tssr33927	transcription start site region 33927	1631 bp downstream
Tssr33928	transcription start site region 33928	1691 bp downstream
Tssr33929	transcription start site region 33929	1805 bp downstream
Tssr33930	transcription start site region 33930	1830 bp downstream