rs31388046 SNP Detail

Summary

• ID
  rs31388046
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35285054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCT CCAGCCACCA GTCCAGGCCC
  S
  GGGCTTCCTC CGCCCGCCCC CCCCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46026970	mCV23682732	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	C
ss148813203	ENSMUSSNP2002347	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
ss322157983	CHEV_7_36370648	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31388046					SNP	G	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35285054 () rs orientation: forward

Symbol	Name	Function Class
Ankrd27	ankyrin repeat domain 27	615 bp upstream
Gm73899	predicted gene, 73899	553 bp downstream
Rgs9bp	regulator of G-protein signalling 9 binding protein	47 bp upstream
Rr400265	regulatory region 400265	400 bp upstream
Rr645414	regulatory region 645414	within coordinates
Rr645415	regulatory region 645415	659 bp proximal
Rr645416	regulatory region 645416	1323 bp proximal
Rr645417	regulatory region 645417	1979 bp proximal
Tssr65908	transcription start site region 65908	603 bp upstream
Tssr65909	transcription start site region 65909	666 bp upstream
Tssr72043	transcription start site region 72043	79 bp upstream
Tssr72044	transcription start site region 72044	62 bp upstream
Tssr72045	transcription start site region 72045	27 bp upstream
Tssr72046	transcription start site region 72046	1308 bp downstream