rs31388006 SNP Detail

Summary

• ID
  rs31388006
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119740739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCAGGGG TCAGGATGTG
  AGCAGGGGTC AGCAGAGAGA AGGTAATAGA TTAACTAATA AAGTGATGCC TGGAAATAGG
  CAAGGTCTGC TCATGTGTTT TCTCTTTTTC CAGGCCCAGG ATGACATAAT CCGGAGAGTG
  TCTTTCTCAC AAAGGCATAA AGCATCTTGT GGCTGGTTTG AGGGCACTAC TTCTAGGAAA
  K
  GGAAGGTTTG TGGATCTTTC AGTCTTTCGT TGGAGGCACT CGATCTTCTC TGTGAATCTG
  CACCATATTT GCATAATAAA GAAAGCCAGT GGTGGCAATC CATTGTTTCT AACTGACCAT
  ATGCTGGATT TCATTGGCTG CTCCCATTGC CTAAGGAGTC CATTTGGTAT TCACTCAGAT
  GGTGGTAGCA AGCCTATTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45528473	mCV24015853	ABI	CRAMUS_MOUSE	f	SNP		G	T					G		G
ss51014272	NES13912289	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	T	T		G	G	G	G	G	G	G	G	G
ss135700181	ENSMUSSNP685929	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31388006					SNP	G	G	T	G	T	T	T	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51014272	NES13912289	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119740739 () rs orientation: forward

Symbol	Name	Function Class
Gm65304	predicted gene, 65304	1057 bp downstream
Rr583954	regulatory region 583954	within coordinates
Rr583955	regulatory region 583955	1607 bp proximal