rs31387805 SNP Detail

Summary

• ID
  rs31387805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116531325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTCGAG TAGCACAACC
  TTCTGTAACC ATCCATGGCT GCATTATATC ACGCAATGAG CCAGTTTCCC CAGCAACCTG
  GGCTTGCGTA AGTCAGCCCT GACCACCCCT CCCCCAGCAC CATGCTGGAT GTGCTGGACA
  TTTCTCTGGG AAAGTTACAC AGCAGATATT GCTTCATTTA TCTCCCTGGC CAGCCATTTC
  Y
  TCATAGCACA TAAAATCATG TATGGTAACA CAGACTGGCG TGAGGAACCA AAGCTGGCCT
  GCTGGGTTAA CTTGTCCTGG ACAGCTTGTC ATTTGGGCTT CACTATGTTG TTTAAGATAG
  TCTCAAATCC CTGAGCTTAA GTGATCCACG TGCTTTTGCC TCCCAAGTAG CTGGGCTATA
  GGAGAGTAAT GCTACATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45529686	mCV24029383	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss135671459	ENSMUSSNP5718794	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31387805					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116531325 () rs orientation: forward

Symbol	Name	Function Class
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr583772	regulatory region 583772	272 bp distal
Rr583773	regulatory region 583773	within coordinates
Rr583774	regulatory region 583774	170 bp distal