rs31386026 SNP Detail

Summary

• ID
  rs31386026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152056197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAATTGAT TGTACAAACG
  CATTACTGGA GTCCTGTGTG ATTTCAGTGT GTACATACTG GGACAGCATC CTTTCTGAGG
  CTTCTCTGTA GTGTCTCTTG AACTCAGACC TTGTGGTAAC AATATGGGTG TGGGTGCTAT
  TCCATAAACT GTGAGGAAGG GAGTATAGCC CCTAAGGAGT GAGCAACCAA GGGCTTAAAG
  Y
  TGCAAACTGT AGAGAAATGT CCCTTAGTGC AGCTGGGCAT GGTGTTTTCT ACTTACCCTG
  TCCTTGCTCA CTGTGACTGC TTCAGAAATG CTCCCTTGTG AGGAACAGGC AAGTTCCTGA
  CGTGCTAGGG AACTTAGGAG AGAAGCAAGG TGTTGAGGTA CCTGGAAGCT GTACTACAGC
  TATCACTAAG ATCCGAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45529235	mCV25024263	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		C
ss51676349	NES14645119	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		C	C	C	C		C	C	C	C		C
ss136102647	ENSMUSSNP6205676	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss321028733	CHEV_3_152013524	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31386026					SNP	T	T	T	C	T	T	T	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676349	NES14645119	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152056197 () rs orientation: forward

Symbol	Name	Function Class
Rr587536	regulatory region 587536	48 bp proximal
Rr587537	regulatory region 587537	1364 bp proximal
Tssr32407	transcription start site region 32407	1986 bp downstream
Tssr32408	transcription start site region 32408	548 bp downstream
Usp33	ubiquitin specific peptidase 33	Intron