rs31385520 SNP Detail

Summary

• ID
  rs31385520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152632912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT CCTACTTCTT
  TAGAGACCAA ATACTGGATT GAATCTGGGG AAAGCTGTGC ACTTTGGAGT GGCCAGGGAC
  CTGGATATGT TGTGTGGTGA TTGATGGTTG TCGGGGGAGG TCTTGAACTT TAAGGCGGTG
  CTATTCCCTC CTCAGGTCTC AGCTTCCTTC TAACGCTTCT GCTTCCATAA TAATGCTTCC
  Y
  GGCTCTGACG TCTTAAAGGG TTAGTGCAGA AGAAACCATT TTGGCTATTT TAGCAGAGAG
  TTCAGTGTTT GACGAGTCAG GTGATTTCTG GTCTTTGCTT TAGTGACAGC TCTCCTCAGA
  CCCTCAGCTT CATCTGGTAA GAAGTGACCG GATGGATTTG GGAATGCTTA TTGTTGAGCA
  TGGGAGAAAT GCTAAACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45529137	mCV22358365	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss136104933	ENSMUSSNP3098012	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss321029237	CHEV_3_152590239	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31385520					SNP	C	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152632912 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	1619 bp upstream
Rr587626	regulatory region 587626	729 bp distal
Rr587627	regulatory region 587627	1175 bp proximal
Rr587628	regulatory region 587628	1630 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	1614 bp upstream