rs31384110 SNP Detail

Summary

• ID
  rs31384110
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120899145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTGAAAATA TGTATACATT CTAAACAACA AACATCTAGC AAAGCTCTCA TTCATTTTAC
  GCGTGAAGAC CAATAAATAA CTGCTCTGTA ATAATGACTG CTGCTGCGGA GTGGTTAAAA
  GGAAGAGACT TCACACGGGG AGATGAGGGG TGGGGTGGCT AGAGAACCAC TATTTTATCT
  TGCTTACGTT GTTATAGACT CAACTCTGTC ACTTAACAAA ATAAGCCGCA TAAAGTGACA
  AAGGAGGAAT CTCTCTGGGT CAGAGCTCCA AAAACACACC AGTCACTGTC CCGCCTCATC
  W
  AGCTAGCGAG CAAGGTATAA TACAACAGCC CCAAATGTTT GTCAGAGAGG CAGTGGCTGT
  CCTTTCTCCC ACCGTGTGAG CAGCCTTAGG TTGTCCAAAG GCTGGAGAAA ATACTGCACT
  TTGTAAGCCT CACCCAGAAT TAAGTGTGCA CTCCAAAAAG GAGTCAGGCC AAGGGACTCA
  AGTCGAGCTC TGCTTTCTCT GATGTCAGCT TTTTCTTAGC AGGCCGGCAG GGGGGTTGCT
  AGGCTCTGTG CCTTTGGAGC AGGATCACCC AGAAGGTGCT CTGTCCGTGA TATACTTATC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45529313	mCV23386858	ABI	CRAMUS_MOUSE	f	SNP	T	A					T		T
ss60441579	NES15944815	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	A	A		T	T	T	T	T	T	T	T	A
ss135713506	ENSMUSSNP5645417	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31384110					SNP	T	A	T	A	A	A	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60441579	NES15944815	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120899145 () rs orientation: forward

Symbol	Name	Function Class
Gm65499	predicted gene, 65499	212 bp upstream
Rr397968	regulatory region 397968	354 bp downstream
Rr584004	regulatory region 584004	within coordinates
Rr584005	regulatory region 584005	468 bp distal