rs31383990 SNP Detail

Summary

• ID
  rs31383990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:156269576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT TATCATGGAG CAGCTGAGAA
  Y
  TGAATACCTT TTTACTCATG TTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45527954	mCV22727427	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss136128471	ENSMUSSNP424944	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C
ss321033467	CHEV_3_156226903	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31383990					SNP	C	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156269576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13974	CpG island 13974	1305 bp distal
Negr1	neuronal growth regulator 1	Intron
Rr587960	regulatory region 587960	1960 bp distal
Rr587961	regulatory region 587961	231 bp distal
Rr587962	regulatory region 587962	1813 bp distal
Tssr32477	transcription start site region 32477	1946 bp downstream
Tssr32478	transcription start site region 32478	1806 bp downstream
Tssr32479	transcription start site region 32479	1743 bp downstream
Tssr32480	transcription start site region 32480	1249 bp downstream
Tssr32481	transcription start site region 32481	1143 bp downstream