rs31383960 SNP Detail

Summary

• ID
  rs31383960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138234226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAGCATTT GCTTTTCCAT TTGATGTTTC CTTCTTAACT
  TTATACTGCT TCCCTCTTAA TGAAAGCGCT ATTTTGAAAT TAATTGAAGC AAGATGCACA
  Y
  AGAGCATCAC GGCGTAACTC CGGTAGCCCG AAGGTGGTGA TTTTTTTTTT TTTTTTTTCT
  TCTGTCATGG TTTGGGTTTG CCAGCAGCTG GCTCACTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45528624	mCV23934662	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135953855	ENSMUSSNP4244597	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31383960					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138234226 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13876	CpG island 13876			60 bp distal
Eif4e	eukaryotic translation initiation factor 4E			Intron
				mRNA-UTR
Mir1956	microRNA 1956			1980 bp downstream
Rr398072	regulatory region 398072			1236 bp downstream
Rr586157	regulatory region 586157			1727 bp distal
Rr586158	regulatory region 586158			1159 bp distal
Rr586159	regulatory region 586159			1540 bp distal
Rr586160	regulatory region 586160			within coordinates
Rr586161	regulatory region 586161			800 bp distal
Tssr31992	transcription start site region 31992			1944 bp downstream
Tssr31993	transcription start site region 31993			1914 bp downstream
Tssr31994	transcription start site region 31994			1883 bp downstream
Tssr31995	transcription start site region 31995			1834 bp downstream
Tssr31996	transcription start site region 31996			1176 bp downstream
Tssr31997	transcription start site region 31997			129 bp upstream
Tssr35899	transcription start site region 35899			1502 bp upstream
Tssr35900	transcription start site region 35900			1463 bp upstream