rs31383805 SNP Detail

Summary

• ID
  rs31383805
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101053935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTCCC CCTTTGTGAT
  CTTTGCCAAA TCTCACAATC CCTCTGTGAT GAGAATACCC CCATTGACTG TAATAAGCAC
  TAGCTGTTCC CTTAGCAGAA GTAGCCCAAG GCGAGGCTGT GAATTGGGCA AGTGTCTGTT
  CTTAGGAGTC CCAGGCTCAC ACTCACCCTC ATCTCCCATT CCCACAAGGG CCGGTTTCTC
  K
  CTCCAAGATG GCGACAGTCT AGACTAATTA GGGCTCTCTT CACTGGGAGC CCCATGTGTA
  TTCACTGGAG CCTTTGGGTA GTTCTTTCCA CAGTCAGAGG CTTCTGGTTT CTCTTTCATA
  ATATAGAGAA AGGAACTCCC AATGGATATA ACCAAAAGGA TATCCCGTGG TTCTCAGCTT
  TAAAAAATAA TAGACTTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45527565	mCV25367553	ABI	CRAMUS_MOUSE	f	SNP		G	T	G		G
ss46811678	NES10722014	PERLEGEN	MM_PANEL2	f	SNP	G				T	G	G	G		T	G	G	T		G
ss135544465	ENSMUSSNP3389250	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T			G
ss320851108	CHEV_3_100950542	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31383805					SNP	G	G	T	G	T	G	G	G	T	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811678	NES10722014	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101053935 () rs orientation: forward

Symbol	Name	Function Class
Rr581969	regulatory region 581969	within coordinates