rs31382221 SNP Detail

Summary

• ID
  rs31382221
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151912016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACTTTGT TACCTTATCA
  GGATATAGCT CAAATGATAA GACTACTTGC TTGTATAGGA GGCCCTGGTT TTGATTTATA
  ACATGGCTGG GAATAAAGCT CTTTGACATT TTAAGGTTTT TGTTCATTTA AGCAGATAGT
  GAACCAGGAA TCAAGTAGCT TCACCTCACA AAAGGTTTGG TGTCAGAGCT GATAGGGCAA
  K
  GAGACAGCTT TCATAGGGTG GATTCCTTTG AGTTCAGGCT AGCCTGGTCT ATATATTGAA
  GTCTAGGAAA GCCAAGGCTA CAATAGTGAG ACCTTATCTC AAACAAGGAA CAAGAAACCC
  CAAATTACCT TCTCTGTGTG TATGTTTGGC TACCTCCAGT TTCAGACACT GGTTAAAATG
  CTGTTCTCTA CCCTGTTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45527654	mCV23509253	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss136101347	ENSMUSSNP4119154	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
ss321028394	CHEV_3_151869343	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31382221					SNP	T	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151912016 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			813 bp downstream
Rr587490	regulatory region 587490			1497 bp distal