rs31382204 SNP Detail

Summary

• ID
  rs31382204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126433861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCATTAAA TGTCTCTCCA
  AATTTAAGTA ACTTTTGAAA AGATTCTCCC AGTTTCCCTT AACACCTAAA TTTGACATTA
  CTTTGGTTGA AGCCATTACT TTCTGGTTTG TCCTCAGTAG ACATGAGGGT AGCCGTTAGC
  ATTCCCAGAA CAATAAGTAG TACAAAATTC TGGAACATGA AAAGACCCCC TCTCAGCTCT
  Y
  CCCTCACATC CCGAACACAC CTAGCGCTTT CACCTACCTT TCTTTTCCAA CCCTGTCATT
  CTCCACGTGA GCTTCTGTTT TCAGTTCTCT GCACTGCCCT CAGATGTCAA GACTTAACCA
  GGCCTGGCTC TCTAGCACAC ACCTAGGAGC GAAGAATAAA ATAAGCAGCT TAGCTCCGAG
  TTTCTAAGTG AATTTTCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45526880	mCV23465807	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss135837679	ENSMUSSNP259806	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320946896	CHEV_3_126343130	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31382204					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126433861 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			1355 bp distal
Rr584664	regulatory region 584664			361 bp distal
Rr584665	regulatory region 584665			399 bp proximal
Rr584666	regulatory region 584666			1032 bp proximal