rs31381840 SNP Detail

Summary

• ID
  rs31381840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142234771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC CAGGGAGATA GGATGAGGGT
  Y
  TTAAAGCCCA CACCCAAAGT GACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45527752	mCV24091430	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31381840					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142234771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13887	CpG island 13887	1481 bp proximal
Gbp7	guanylate binding protein 7	1332 bp upstream
Gm66604	predicted gene, 66604	within coordinates
Rr586449	regulatory region 586449	842 bp proximal
Rr586450	regulatory region 586450	1343 bp proximal
Rr586451	regulatory region 586451	1860 bp proximal
Tssr32116	transcription start site region 32116	1277 bp upstream
Tssr32117	transcription start site region 32117	1319 bp upstream