rs31381216 SNP Detail

Summary

• ID
  rs31381216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145121803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAAATA GCATAAAGTA
  GGGGTCAGAA AGCTTTTGTG TAAAGGGCCA GTGACTGAAT GTTTAAAATT CTGAGCCATA
  TGGGTTCTGT TGCAGGCTCT TAGCTATGGC ACTGTACTGT GAACCCAGTC ACAGACAACA
  ATGAATGAAT GAGCCTGGCT GTTTCCCGTG AAACTTTATT TATAAAAACA GACAGTGGGC
  R
  TGAATGGGCC GCCGGCTGTA GTGTCTCTTC CTGCTCTGCC ATGTTATAGT TGTTCTAGGA
  TGTGGCAGCT TTCTTGTGTC TGTCTTATGT GCACCCTGTT TTATTAATCT TTTGTCATTA
  ACAAAAAAGC AATGAACACA AATATGATTT CTCTGTATCT TAGTTTCAAA TCCAAAAACC
  AATTCAAGTT AGCAGGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45528687	mCV23543980	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31381216					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145121803 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			1866 bp proximal
Rr586780	regulatory region 586780			1986 bp proximal