rs31381115 SNP Detail

Summary

• ID
  rs31381115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146050047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTATTTTTA AAAAATAAAA TCTGAAGTGG
  GTGGAGTAAA AAAAAATCAT ACCACTAGTA AAAGAGACAT CAGGGCTTTG GGCCTTGCGG
  GAGGAAGCTT CCAGAAGGCT GAGGCAGCCC ACTTGACTGT ATGTGAGAAG ATGTAGACAT
  Y
  TGGCTTCCTC CCACTCTTTT TTCATTGGAT CTCATATCTC TGTAAATCAT CAGAAAGCTT
  TCTGTGGCTT TTTTTTCCCC AGTATTTCCA CTATAACACT TCCACCTCTT ACAGTGTCCT
  ACATCACACA ACATCAACAG TTGATTTCCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45527264	mCV24236770	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss136043397	ENSMUSSNP4824435	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss321010013	CHEV_3_146007256	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31381115					SNP	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146050047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	993 bp proximal
Rr587007	regulatory region 587007	1800 bp distal
Rr587008	regulatory region 587008	253 bp distal
Rr587009	regulatory region 587009	458 bp distal
Rr587010	regulatory region 587010	799 bp proximal
Rr587011	regulatory region 587011	1105 bp proximal