rs31379731 SNP Detail

Summary

• ID
  rs31379731
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27254536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGGGAC AAGGCAGAGA
  ACACGAGAGG AAGATTCTCG ATGCCTTCTT CTGGGTCTCC ATTCACATGT ACGCACATGT
  ACACACATAC ACAGTAAATA AATAATATTC AAAATAATAA AAATGGTAGT GCTCTTGCCT
  AGTGTGTGAA GTCCCAGGTA GTTAGCATCT AAAACACGCA AAGCCAACAA CAAAAAACTG
  K
  GTCACACCTG TATAATGGCG TGTAAGTTTT ATTATTCAAC ACAAAACAAC ATGGATTTCT
  GTTGTTTAGA TCTAGTTGCT TTTTGTTGTC AGCAAAGACG TCATAATAAA TCTGTCCTGC
  TGGACCCCTA GTCTGTTGCT TCAAGAAGTC ATTCTTTGCT GGAGAGATGG CTCAGCAGGT
  AAGAGCACTA ACTGCCCTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45527081	mCV24689814	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31379731					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27254536 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit305	DNA Segment, Chr 3, Massachusetts Institute of Technology 305			1323 bp distal
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574365	regulatory region 574365			1375 bp proximal