rs31378871 SNP Detail

Summary

• ID
  rs31378871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148599671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCCCTGT GTTTCTCTAA
  GTTCTCACTT CCTTTTCTGA ATAAAATCAG CTAAGAATTG TGTAAGATTT TCCCAGATTA
  TGAGTCTAAA CTAACGAGAT GCTTCTAACG AATCACATAT TTGCTTTTCC AATTTTTTCC
  CAGTCACCCA CCATTACTCT AGAATTCACT CTACTTCTCC AAGCTGTGGA CACAGGGCAT
  Y
  GGTAAACCGA TGCAGTGTGG TGGGACAAGG CAGATCATTT GGTTACTACC AAGAAAAGTC
  TCAAAGTTGT CTTATAAACA AAACAGGCTT TGAGTGGCAC TGGGGCATTT CTTTCTGGAT
  TGGCTATTTA ATCCAAAGAC TTATTAGAGG GTGAAAAACC CTTGGGTGTC AGTCATAAAA
  ACTCAACAAC AACCAACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45527718	mCV23527266	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss136065017	ENSMUSSNP5487009	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31378871					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148599671 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587222	regulatory region 587222	1468 bp proximal