rs31378609 SNP Detail

Summary

• ID
  rs31378609
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87081867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC TCGCTTGCCT CTCTAGCCGC
  S
  GGCTCGCTCC CCTGGCCCCT CCTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45527892	mCV24904429	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
ss135455073	ENSMUSSNP1798935	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320831253	CHEV_3_86978482	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31378609					SNP	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87081867 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13330	CpG island 13330	within coordinates
Gm64310	predicted gene, 64310	within coordinates
Kirrel1	kirre like nephrin family adhesion molecule 1	mRNA-UTR
Rr579454	regulatory region 579454	1894 bp distal
Rr579455	regulatory region 579455	393 bp distal
Rr579456	regulatory region 579456	21 bp distal
Rr579457	regulatory region 579457	within coordinates
Rr579458	regulatory region 579458	1179 bp proximal
Rr579459	regulatory region 579459	1265 bp proximal
Tssr33927	transcription start site region 33927	75 bp upstream
Tssr33928	transcription start site region 33928	within coordinates
Tssr33929	transcription start site region 33929	72 bp downstream
Tssr33930	transcription start site region 33930	97 bp downstream