rs31378148 SNP Detail

Summary

• ID
  rs31378148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41518660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG AGGCTGTGAG GGTATGTTTT
  Y
  CCAAACATAG GTGTGAGGGG GTACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45527138	mCV23248019	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss135042147	ENSMUSSNP4328817	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss320728793	CHEV_3_41368147	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31378148					SNP	T	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41518660 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13118	CpG island 13118			within coordinates
Cpgi13119	CpG island 13119			289 bp proximal
Gm31266	predicted gene, 31266			888 bp upstream
Jade1	jade family PHD finger 1			Intron
				Noncoding-Transcript-Variant
Rr575965	regulatory region 575965			608 bp distal
Rr575966	regulatory region 575966			856 bp distal
Rr575967	regulatory region 575967			37 bp distal
Rr575968	regulatory region 575968			262 bp distal
Rr575969	regulatory region 575969			139 bp proximal
Rr575970	regulatory region 575970			706 bp proximal
Rr575971	regulatory region 575971			975 bp proximal
Rr575972	regulatory region 575972			1547 bp proximal
Rr575973	regulatory region 575973			1944 bp proximal
Rr575974	regulatory region 575974			1955 bp proximal
Tssr29002	transcription start site region 29002			833 bp downstream
Tssr29003	transcription start site region 29003			759 bp downstream
Tssr29004	transcription start site region 29004			647 bp upstream
Tssr29005	transcription start site region 29005			696 bp upstream
Tssr29006	transcription start site region 29006			772 bp upstream
Tssr33082	transcription start site region 33082			1284 bp downstream