rs31377574 SNP Detail

Summary

• ID
  rs31377574
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:169776979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC TTGTGATAGA TGCTGTCAAT
  S
  TGTTCTTCAA GAGTAACGAC AGTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45025982	mCV24439457	ABI	CRAMUS_MOUSE	f	SNP		C					G
ss49743321	NES13034397	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	G	C	C		C	G	C		G	G	G
ss146115737	ENSMUSSNP5886290	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320105853	CHEV_1_171879541	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs31377574					SNP	C	C	G	G	C	C	G	C	G	C	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49743321	NES13034397	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169776979 () rs orientation: forward

Symbol	Name	Function Class
Hsd17b7	hydroxysteroid (17-beta) dehydrogenase 7	130 bp downstream
Rr422992	regulatory region 422992	1527 bp distal
Rr422993	regulatory region 422993	1399 bp proximal