rs31375134 SNP Detail

Summary

• ID
  rs31375134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129475214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG AGTAGTCCGT GATCTTAGTA
  Y
  AGTGTACTTA GATATAATAA TAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45526895	mCV25348748	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss320962758	CHEV_3_129384483	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31375134					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129475214 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			1318 bp distal
Rr585060	regulatory region 585060			784 bp distal
Rr585061	regulatory region 585061			100 bp distal
Rr585062	regulatory region 585062			271 bp proximal
Rr585063	regulatory region 585063			882 bp proximal
Rr585064	regulatory region 585064			1894 bp proximal
Tssr35620	transcription start site region 35620			1720 bp downstream