rs31365974 SNP Detail

Summary

• ID
  rs31365974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30520604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATCTTATT TGGTTTTCAA CAGGTTTATT TCCATTGCAG
  CCCAGGGCTT CCAACGCCCA AACACCCAAC CCATTATGCC CGTATATGGT GAGCACACTG
  R
  TTTCTGTTTC CTCTCCCTGA GAACCTACAC CTCACTCCCT TTGTAGTTCT GCCTTTTCAA
  AAGGCCCTCG GAAGGTTCTT TGCTCCTCTG GTGATTGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45526082	mCV22965612	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss134731490	ENSMUSSNP5483280	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31365974					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30520604 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574772	regulatory region 574772			within coordinates
Rr574773	regulatory region 574773			1541 bp proximal