rs31362972 SNP Detail

Summary

• ID
  rs31362972
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133220779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTTGCT CCGGCCCTGT
  GATTTATTGA TTATTATATA TCTAAGTACA CTGTAGCTGT CTTCTGACAC ACCAGAAGAG
  GGCGTCAGAC CTCATTATGG ATGGTTGTGA GCCACCATGT GGTTGCTGGG ATTTGAACTC
  AGGACCTTCG GAAGAGCAGT CAGTGCTCTT AACTGCTGAG CCATCTCTCC AGCCCATCTA
  W
  TATGCATTCT TAAAAGATTA CCTGAAAAGA AAAATACACT GAAAACAACA GAACCTACTC
  CACCAAAGAC ACAGTGAAAG TCTTGAGTGT TAGAAAATTT AGAGTTCTAC GGTAGGGTGG
  AGTTACTTGA GAGAGAAATG GGGCTCCCAG TCTTCTACAA CCTTTCCAAC ACGTGTTGTG
  GTACATTCTT TTAATTATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45526056	mCV23615597	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss135918688	ENSMUSSNP3923107	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31362972					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133220779 () rs orientation: forward

Symbol	Name	Function Class
Rr585556	regulatory region 585556	1166 bp proximal
Tet2	tet methylcytosine dioxygenase 2	Intron