rs31357917 SNP Detail

Summary

• ID
  rs31357917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145123621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAGTGCA CATCCCTCTG
  TGAACGGGCC TGCTAGTTAT TAGTCTCAGG GAGACCGCAC AGTGAGGAAG TTATTGCAAC
  ACAAGTGTCG CTGCAGGAGA ATGTCCTTTA TTTCTCATCC AACTTACTTT CTTTAAAAAA
  AAAAAATAGC CTGAGTTGAA TAAAGATAGG TGGCAGCTCT CTGTCGATAC TCACATTATC
  R
  CCTTTGATTG ATTACCCAGA GGCTCATCGT TGGCCGCGCT GCCAGGCAAG TTTGGGACAG
  CATGAGTGAC CCATTCCTTT CTCGTGTTTC CCATAGCACA AGTGTGACTA CCGGCATCTG
  CTCAGAGGAC ATTCCAGGCA TAGCCTCCTG ATCATTGCCA GAACTGCCTG GCAATGCTAA
  CGCCTCTCTC TGAGCTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45525990	mCV23543647	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss136038425	ENSMUSSNP2431500	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
ss321008293	CHEV_3_145080830	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31357917					SNP	A	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145123621 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
D530037P16Rik	RIKEN cDNA D530037P16 gene			1460 bp upstream
Rr586779	regulatory region 586779			48 bp proximal
Rr586780	regulatory region 586780			168 bp proximal