rs31354042 SNP Detail

Summary

• ID
  rs31354042
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:17980171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCTGTG TATATTTCTG
  TGTGATAAGT GTTTGTGTGT GTCTCTGTAT GTGCCTGTGT GTGTTATATG TGTGTGTGTA
  TATATCTGTG TTTTGTCTGT ATGTGTTGTA TGTGTGTTGT GTGTGTGATG TGTGTGATGT
  GTGTATGTCT GTGTGTGTTG TGTGTGTTTC TATGTGTCTG TGTATTGCTT GTGTGTATTA
  K
  CTAGTTAAGT GTCTAGAAAA ATGCATCTCT GCATCTGGGG AAACTTTTGT GTCTAAAGGA
  CTCTGTGACT TTGGGAGGAA GTGCCCTTGG CTGTTCTAGT ATAGTAGTAT AACCATAGAC
  TCCCGTGAAC TTGGTGGGGC AGGATGATCA ATGGTTATCC AGAGCTGGTG GCCTCAAGCT
  TTCACTGAGG TCAGGAAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss46023667	mCV24837720	ABI	CRAMUS_MOUSE	f	SNP		G	T					T
ss51883290	NES14902287	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	G		T	T	G
ss148438470	ENSMUSSNP4563682	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs31354042					SNP	G	G	T	T	T	G	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51883290	NES14902287	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:17980171 () rs orientation: forward

Symbol	Name	Function Class
Mill1	MHC I like leukocyte 1	Intron
Tssr64734	transcription start site region 64734	1030 bp downstream
Tssr64735	transcription start site region 64735	1010 bp downstream
Tssr64736	transcription start site region 64736	844 bp downstream