rs31345572 SNP Detail

Summary

• ID
  rs31345572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81818314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAAATGAA ACACATGCTC TTACCTTGCC TGAGATGATG
  GTATTTTGAG TCATACAAGA ATCTAGGGTA TTGAGGCATG CCCAGGGCAG AGTCAGATCC
  R
  ATATTTGTCA TTAACTCTCC TGGCCATGAT ATTTGAGAAC ATGTAAATGT CAAGGATTAA
  AGCCAAATAG TCATACTCAT GCTGGGGACA GCAGAGTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45525246	mCV23520647	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss46709725	NES10760607	PERLEGEN	MM_PANEL2	f	SNP			G		A	A		A	A	A		A
ss135398652	ENSMUSSNP4802007	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss320817066	CHEV_3_81714929	CHEVERUD	SCREENING_POP	f	SNP							G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31345572					SNP	G	G	G	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46709725	NES10760607	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81818314 () rs orientation: forward

Symbol	Name	Function Class
Gm9989	predicted gene 9989	within coordinates
Rr375244	regulatory region 375244	174 bp downstream
Rr578719	regulatory region 578719	within coordinates