rs31343919 SNP Detail

Summary

• ID
  rs31343919
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116761247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA TCAAAAGTTA CAGCTAATAA
  Y
  GATAGATGAC CAGGTCAGGG ACTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45524939	mCV23494736	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135676609	ENSMUSSNP1245549	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320897079	CHEV_3_116670516	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31343919					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116761247 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			669 bp upstream
Cpgi13743	CpG island 13743			995 bp proximal
Gm52613	predicted gene, 52613			within coordinates
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			963 bp distal
Rr583815	regulatory region 583815			394 bp distal
Rr583816	regulatory region 583816			791 bp distal
Rr583817	regulatory region 583817			579 bp proximal
Rr583818	regulatory region 583818			1250 bp proximal
Tssr35360	transcription start site region 35360			940 bp downstream
Tssr35361	transcription start site region 35361			965 bp downstream
Tssr35362	transcription start site region 35362			1030 bp downstream
Tssr35363	transcription start site region 35363			1078 bp downstream
Tssr35364	transcription start site region 35364			1114 bp downstream
Tssr35365	transcription start site region 35365			1174 bp downstream
Tssr35366	transcription start site region 35366			1192 bp downstream
Tssr35367	transcription start site region 35367			1229 bp downstream
Tssr35368	transcription start site region 35368			1330 bp downstream
Tssr35369	transcription start site region 35369			1371 bp downstream
Tssr35370	transcription start site region 35370			1414 bp downstream
Tssr35371	transcription start site region 35371			1916 bp downstream