rs31343045 SNP Detail

Summary

• ID
  rs31343045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26693048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA TAGGCACCAG TAAAGGTCTC
  Y
  TTTTGAAACA CTAGGAGAGT GCTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45524271	mCV24231340	ABI	CRAMUS_MOUSE	f	SNP	C	C							T
ss51442536	NES14434421	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	C	T	T	T	T		T	C	C	T		T
ss134696949	ENSMUSSNP1079531	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320687948	CHEV_3_26537821	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31343045					SNP	C	C	C	C	T	C	C	T	T	T	T	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442536	NES14434421	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26693048 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	1345 bp upstream
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	314 bp proximal
Rr574325	regulatory region 574325	548 bp proximal
Rr574326	regulatory region 574326	1257 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	1262 bp downstream
Tssr28598	transcription start site region 28598	1239 bp downstream