rs31338868 SNP Detail

Summary

• ID
  rs31338868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130509501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATA ATTCTATTAA ATTTTTAACA
  Y
  GATACATCTT TTAATAAATA TGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss45524423	mCV22791272	ABI	CRAMUS_MOUSE	f	SNP	C	T			T		C
ss61080501	NES16598769	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T		C		C		C		C
ss135898409	ENSMUSSNP4027607	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss320966228	CHEV_3_130418770	CHEVERUD	SCREENING_POP	f	SNP									C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs31338868					SNP	C	T	T	T	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080501	NES16598769	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130509501 () rs orientation: forward

Symbol	Name	Function Class
Rr398018	regulatory region 398018	261 bp downstream
Rr585199	regulatory region 585199	1516 bp distal
Rr585200	regulatory region 585200	223 bp distal