rs31335978 SNP Detail

Summary

• ID
  rs31335978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129897516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT CCCAAATGGT GGAATAGTTA
  Y
  GAGTCACCAA ACCAAGCTTC TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45524190	mCV22650563	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135891765	ENSMUSSNP5496558	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320964235	CHEV_3_129806785	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31335978					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129897516 () rs orientation: forward

Symbol	Name	Function Class
Rr585133	regulatory region 585133	488 bp distal
Rr585134	regulatory region 585134	91 bp distal
Rr585135	regulatory region 585135	171 bp distal