rs31335479 SNP Detail

Summary

• ID
  rs31335479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58422996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTTTTAAA AAATATTTTT ATCTATGTAC TTGTGTATGT
  GTGTGTGTTT GTGCACATGT GTGCATGTGT ATCATACACT GACATGTATG AATGCCACAG
  R
  TATACAGGTG TGTGAGTTAC AAATGATCTT AAACCACCTG ACATAGGTGC TGGGAACTGA
  ACTCTGGTCC TACAGAAGGA CAGCAAGTGC TCTTAAGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45524092	mCV24915836	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	A
ss135207017	ENSMUSSNP4264849	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss320783113	CHEV_3_58319497	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31335479					SNP	G	G	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58422996 () rs orientation: forward

Symbol	Name	Function Class
Rr397679	regulatory region 397679	982 bp upstream
Rr397680	regulatory region 397680	1682 bp upstream
Rr577242	regulatory region 577242	1792 bp distal
Rr577243	regulatory region 577243	1889 bp distal
Rr577244	regulatory region 577244	638 bp proximal
Rr577245	regulatory region 577245	1935 bp proximal
Tssr29205	transcription start site region 29205	1913 bp upstream
Tssr29206	transcription start site region 29206	1962 bp upstream