rs31334630 SNP Detail

Summary

• ID
  rs31334630
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27391275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAAACCA AACAACTCCA
  AAGGAGCCCA TATGTGTTTT AATGAAACAT TTTTTAAGCC TATTGGGGGC CTGAAGAGAT
  TGCTCAGAGG AAAACAGCAC TTCCAGAGGA CCCAGGTTCA ATTCTCATCG CTGATGTGAT
  AGTTAACAGC TGTAACTTCA GTTCCAAGGG GTCTGACTTT CTGCCCTTTG CTTGCAATGC
  W
  TGTATGTGAT ACACAGACAT ACATTCTGAC AAAATATATC CATACACAAA AGTATTTTTT
  TAAAAGCTTA TTTGAATGTA AGAGTATGGC TAGCTGTCAC TTCTGATACC CCTTCTTATT
  TTTTTATGAC TCAAGCCCTT ATAAACTAGC AAATAGAAGT CACAGCTACC ACTTGAATAT
  AAGCACTTGA ATACCTCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45522282	mCV24740010	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss134703976	ENSMUSSNP7195038	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31334630					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27391275 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574397	regulatory region 574397			1383 bp proximal
Rr574398	regulatory region 574398			1518 bp proximal
Tnfsf10	tumor necrosis factor (ligand) superfamily, member 10			Intron
				mRNA-UTR