rs31334158 SNP Detail

Summary

• ID
  rs31334158
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121890913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAGTTTCT TCCTCCTGAC CTCATAAAGA AAGTTTGGTG
  AGGGTAATGT GATATTTGTG TTTGGTTTTT ATAAAACCTT CCCCTGGGCA GCAGCAGCTG
  R
  AAGTCCCCCA CTGGCCGATG GGCAGCTAGT AGATACCACC CTCTCTACCC CATTGCCCAG
  GTGGCCTTGG CTTCCGGCCA CAGCAGTGTT CTGGCCAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45522734	mCV23985192	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss135734893	ENSMUSSNP4658777	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss320908317	CHEV_3_121800182	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31334158					SNP	G	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121890913 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr584230	regulatory region 584230			within coordinates