rs31333304 SNP Detail

Summary

• ID
  rs31333304
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34249519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATAGTGCTAC CATTGTGTAT GTGAGTGTAC ACTAAAGCCG CTCATGCCCA AGATCTGGAA
  GCCATTAAGT TCGGTCACAG GTGCCCATCC AAATGTGGCC TCATTTTGAC AATTGCTGCC
  ATGGCCAATA TTTATAGTAT TTTTCAAGCT TTCAGGCAGT TAAAAGCCCT TTTATATTAA
  TAACCTTATA TTGCTCTGTG GTTTAAAATA GCACAGAAAA TTTCCCCTAC TCACATAGGT
  TTTTATCTAG TATTAGGTGT ATTATGTATT GTATGTGCAA TGTTAGGCTG TATTTTCAGT
  W
  ATGGGGATAA CTGAACCCTG GTTTTTATTC CTAAAAGATA CTTTCTTTAC AATCACCCTG
  AATTCAAAAA GCAATGAACT AGTGGCCAGA AAGTCTAGCC CTGTTTTCTA TTTAGGAAAG
  TTGTGGGCAA TTCTATGGCA ATTCTGTTGC AATAGCAGAG GGTAAAGGAC TTCAATTATA
  CCTGCAGTCA TCTGGGTGAC TTTGATTAGA AATATAAAGT AACCCCCGAG ATGGGATGAA
  CCAGAAGCAC CCATTCCCTT TCTGAAGGAG CTTGTTTTCG CTGGTGTCTG AGAGCATCAT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45522718	mCV25347655	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31333304					SNP	A	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34249519 () rs orientation: forward

Symbol	Name	Function Class
Rr575108	regulatory region 575108	971 bp proximal
Rr575109	regulatory region 575109	1569 bp proximal
Tssr28802	transcription start site region 28802	1372 bp upstream
Tssr28803	transcription start site region 28803	1407 bp upstream
Tssr28804	transcription start site region 28804	1552 bp upstream