rs31332891 SNP Detail

Summary

• ID
  rs31332891
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145121804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAAATAG CATAAAGTAG
  GGGTCAGAAA GCTTTTGTGT AAAGGGCCAG TGACTGAATG TTTAAAATTC TGAGCCATAT
  GGGTTCTGTT GCAGGCTCTT AGCTATGGCA CTGTACTGTG AACCCAGTCA CAGACAACAA
  TGAATGAATG AGCCTGGCTG TTTCCCGTGA AACTTTATTT ATAAAAACAG ACAGTGGGCA
  W
  GAATGGGCCG CCGGCTGTAG TGTCTCTTCC TGCTCTGCCA TGTTATAGTT GTTCTAGGAT
  GTGGCAGCTT TCTTGTGTCT GTCTTATGTG CACCCTGTTT TATTAATCTT TTGTCATTAA
  CAAAAAAGCA ATGAACACAA ATATGATTTC TCTGTATCTT AGTTTCAAAT CCAAAAACCA
  ATTCAAGTTA GCAGGCAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45522818	mCV23543979	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss136038380	ENSMUSSNP3700383	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31332891					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145121804 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			1865 bp proximal
Rr586780	regulatory region 586780			1985 bp proximal